Both clubs have been charged with failing to control their players and/or officials. This charge relates to a mass confrontation on the touchline in the second half of the match on 20th January.
Reading coach Wally Downes has been charged with improper conduct in relation to the same incident.
All three parties have until Feb 7th to respond to the charges.
In the meantime Keith Gillespie has admitted a charge of violent conduct and has requested a personal hearing.